Microbial genomics
Microbial genomics · typing & surveillance
Characterisation and comparison of microbial genomes, from quality control and assembly to typing, phylogenomics and collection-level analysis.
Assembly & characterisation
Short, long or hybrid reads: quality control, assembly, polishing, annotation, quality metrics and organism-appropriate genomic characterisation.
Typing & genomic surveillance
Phylogeny, SNP or allelic distances, cgMLST, sequence types and metadata describe relationships among isolates and highlight genetically close groups.
AMR, virulence & comparative genomics
Resistance and virulence determinants, plasmids or other mobile elements where supported, plus pangenome and presence/absence analyses when relevant.
Results provided
Assemblies and annotations, typing profiles, distance matrices, trees, determinant tables, quality metrics and interactive reporting.
Reporting examples
Pangenome · Core & Accessory
Presence/absence atlas across 60 genomes, gene-frequency spectrum, pan/core curves and lineage-specific modules.
Explore example →